Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs2249119 chr1:68276509 T/A 8.3E-5 489 30.87 29.23 34.55 KM Plot
PRAD rs2249130 chr1:68276978 G/C 8.07E-5 490 30.87 29.32 34.55 KM Plot
PRAD rs2249763 chr1:68281932 C/G 0.000137 492 30.8 30.27 37.37 KM Plot
PRAD rs2255722 chr1:93646433 T/C 1.08E-8 493 31.28 28.72 9.17 KM Plot
PRAD rs2265921 chr1:68273780 T/G 0.000152 487 30.87 29.32 36.87 KM Plot
PRAD rs2265922 chr1:68274218 A/G 8.44E-5 487 30.93 29.23 36.87 KM Plot
PRAD rs2271951 chr19:49990843 A/G 0.000118 488 30.3 33.47 26.8 KM Plot
PRAD rs2271953 chr19:49990666 A/C 0.000118 488 30.3 33.47 26.8 KM Plot
PRAD rs2275892 chr1:202779438 G/A 6.85E-6 486 30.8 32.63 37.17 KM Plot
PRAD rs2275893 chr1:202779441 C/A 6.85E-6 486 30.8 32.63 37.17 KM Plot
PRAD rs2276914 chr4:187072932 C/T 0.000162 494 31.28 28.1 50.92 KM Plot
PRAD rs2277386 chr12:52842911 A/T 0.000131 492 29.23 36.33 22.93 KM Plot
PRAD rs2281189 chr1:6722559 T/C 0.000167 491 29.23 31.13 31.48 KM Plot
PRAD rs2281190 chr1:6720990 C/A 0.000128 494 29.6 31.13 30.73 KM Plot
PRAD rs2281524 chr1:93602194 A/G 1.0E-8 494 31.37 27.13 9.17 KM Plot